Biology, Life Sciences & Basic Medicine

• The Generic Circumscription of Tetrapisispora Ueda-Nishinura et Mikata (1999) (Saccharomycetaceae): The Proposal of Nishimuraea gen. nov.

  Taweesak Malimas, Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tanasupawat, Yuzo Yamada

  • Tetrapisispora phaffii
  • Tetrapisispora blattae
  • Tetrapisispora namnaonensis
  • Nishimuraea gen. nov.
  • Nishimuraea blattae comb. nov.

  Downloads ：234 - Submitted 2023-03-21 12:55:55 UTC - Posted 2023-04-24 02:19:28 UTC - Versions: 3

  • PDF_ver.3

• The Subdivision of the Genus Eremothecium Borzi emend. Kurtzman (1995)

  Taweesak Malimas, Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tnasupawat, Yuzo Yamada

  • Crebrothecium ashbyi
  • Nematospora coryli
  • Eremothecium cymbalariae
  • Ashbya gossypii
  • Holleya sinecauda

  Downloads ：166 - Submitted 2023-02-12 11:46:05 UTC - Posted 2023-04-24 02:14:23 UTC - Versions: 2

  • PDF_ver.2

• The Subdivision of the Genus Kazachstania Zubkova sensu Kurtzman (2003) (Sacchromycetaceae)

  Taweesak Malimas, Huong Thi Lan Vu, Pattraporn Yukphan, Somboon Tanasupawat, Yuzo Yamada

  • Kazachstania viticola
  • Vanderwaltomyces africanus
  • Arxiozyma telluris
  • Neovaughania barnettii
  • Pachytichospora transvaarensis

  Downloads ：215 - Submitted 2023-03-16 11:05:43 UTC - Posted 2023-04-21 04:15:36 UTC - Versions: 3

  • PDF_ver.3

• Oncogenic stress-induced Netrin reprograms systemic metabolism as a humoral inter-organ molecule in Drosophila

  Morihiro Okada, Tomomi Takano, Yuko Ikegawa, Hanna Ciesielski, Hiroshi Nishida, Sa Kan Yoo

  • Netrin
  • oncogenic stress
  • inter-organ communication
  • Drosophila

  Downloads ：435 - Submitted 2022-07-07 09:46:46 UTC - Posted 2023-03-29 23:46:17 UTC - Versions: 2

  • PDF_ver.2

• SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotypes spread in Japan

  So Nakagawa, Toshiaki Katayama, Lihua Jin, Jiaqi Wu, Kirill Kryukov, Rise Oyachi, Junko S Takeuchi, Takatomo Fujisawa, Satomi Asano, Momoka Komatsu, Jun-ichi Onami, Takashi Abe, Masanori Arita

  • COVID-19
  • haplotype
  • genomic surveillance
  • SARS-CoV-2
  • web visualization

  Downloads ：221 - Submitted 2023-03-22 08:46:03 UTC - Posted 2023-03-23 23:06:02 UTC

  • PDF
  • Supplement_PDF

• Genes selection from single cell gene expression profiles of melanomas using tensor decomposition based feature extraction

  Nobuchika Matsuda, Y-h. Taguchi

  • machine learning
  • cancer

  Downloads ：235 - Submitted 2023-03-21 07:08:39 UTC - Posted 2023-03-23 08:22:36 UTC

  • PDF (日本語)
  • Supplement-1_XLSX (日本語)
  • Supplement-2_XLSX (日本語)
  • Supplement-3_XLSX (日本語)
  • Supplement-4_XLSX (日本語)
  • Supplement-5_XLSX (日本語)
  • Supplement-6_XLSX (日本語)

• The Generic Circumscription of Kazachstania Zubkova (1971) (Sacchromycetaceae) The Proposal of the New Genus Vanderwaltomyces

  Taweesak Malimas, Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tanasupawat, Yuzo Yamada

  • Kazachstania
  • Kazachstania viticola
  • Kluyveromyces
  • Vanderwaltomyces gen. nov
  • Vanderwaltomyces africanus comb. nov.

  Downloads ：131 - Submitted 2023-03-08 08:35:09 UTC - Posted 2023-03-13 01:04:11 UTC - Versions: 2

  • PDF_ver.2

• The Reinstatement of the Genus Kloeckeraspora Niehaus (1932) (Apiculate Yeast)

  Taweesak Malimas, Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tanasupawat, Yuzo Yamada

  • Kloeckeraspora osmophila
  • Kloeckerasora vineae
  • Kloeckeraspora occidentalis
  • Hanseniaspora valvyensis
  • Hanseniaspora uvarum

  Downloads ：147 - Submitted 2023-02-28 01:19:56 UTC - Posted 2023-03-13 00:35:06 UTC - Versions: 2

  • PDF_ver.2

• Estimation of Metabolic Effects upon Cadmium Exposure during Pregnancy Using Tensor Decomposition

  Yuki Amakura

  • Machine Learning
  • Diabetes

  Downloads ：168 - Submitted 2023-02-22 03:04:05 UTC - Posted 2023-03-07 08:50:45 UTC

  • PDF (日本語)

• The Generic Circumscription of Eremothecium emend. Kurtzman

  Yuzo Yamada

  • Crebrothecium ashbyi
  • Nematospora coryli
  • Eremothecium cymbalariae
  • Ashbya gossypii
  • Holleya sinecauda

  Downloads ：156 - Submitted 2023-02-02 11:53:48 UTC - Posted 2023-02-20 02:21:40 UTC - Versions: 3

  • PDF_ver.3

• Ecological inference based on kinship assignment: a new approach to obtain contemporary information for conservation purposes

  Tetsuya Akita

  • parentage
  • close-kin mark-recaputure
  • population size estimation

  Downloads ：426 - Submitted 2023-02-10 03:49:44 UTC - Posted 2023-02-13 08:27:09 UTC

  • PDF (日本語)

• Correlation analysis between time awareness and morningness-eveningness preference

  Reimi Sogawa, Fuminori Ono, Masahiko Terao, Shunta Nagano, Junko Kawabe, Makoto Akashi

  • time awareness
  • morningness-eveningness preference

  Downloads ：141 - Submitted 2023-02-08 11:21:19 UTC - Posted 2023-02-10 05:55:47 UTC

  • PDF
  • Supplement_WORD

• More requirements for whole genome sequencing analysis: size and chromatin conformation of nuclear DNA

  Shigehiro Kuraku, Osamu Nishimura, Mitsutaka Kadota

  • genome
  • genome size
  • chromatin
  • Hi-C
  • C-value

  Downloads ：873 - Submitted 2023-02-05 02:28:52 UTC - Posted 2023-02-06 10:41:02 UTC

  • PDF (日本語)

• The α-helical transmembrane domains and intrinsically disordered regions on the human proteins are coded for by the skews of their genes' nucleic acid composition with the "universal" assignment of the genetic code table

  Genshiro Esumi

  • transmembrane domains
  • intrinsically disordered regions
  • nucleic acid composition
  • TA skew
  • GC content
  • genetic code table
  • Chargaff's second parity rule

  Downloads ：223 - Submitted 2023-01-16 01:13:30 UTC - Posted 2023-01-23 08:45:46 UTC

  • PDF (日本語)

• The Generic Circumscription of Kockiozyma (Lipomycetaceae)

  Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tanasupawat, Yuzo Yamada

  • Kockiozyma suomiensis
  • Myxozyma geophila
  • Kockiozyma geophila f.a.
  • Kockiozyma sirexii f.a.
  • Zygozyma oligophaga

  Downloads ：219 - Submitted 2022-11-20 06:51:27 UTC - Posted 2022-12-02 04:35:50 UTC - Versions: 2

  • PDF_ver.2

• The Revision of Lipomycetaceae

  Yuzo Yamada, Huong Thi Lan Vu, Pattaraporn Yukphan, Somboon Tanasupawat

  • Waltomyces
  • Zygozyma
  • Babjevia
  • Smithiozyma
  • Kockiozyma

  Downloads ：507 - Submitted 2022-10-13 17:50:15 UTC - Posted 2022-11-28 02:12:47 UTC - Versions: 5

  • PDF_ver.5

• Understanding the characteristics of the microbiomes of the built environment and their effects on the human body

  Kohei Ito

  • Built environment
  • Microbiome
  • Antibiotic Resistance
  • Autoimmune disease
  • Infection

  Downloads ：628 - Submitted 2022-09-21 01:30:59 UTC - Posted 2022-11-15 04:29:21 UTC - Versions: 2

  • PDF_ver.2 (日本語)

• Chicken Cell Atlas: Science and DeSci

  Masahito Yamagata

  • single-cell RNA sequencing
  • cell atlas
  • transcriptome
  • proteome
  • multimodal integration
  • decentralized science

  Downloads ：340 - Submitted 2022-10-06 03:31:49 UTC - Posted 2022-10-11 05:22:11 UTC

  • PDF

• Salience as affordance: implications for aberrant salience hypothesis of psychosis from active inference perspective

  Masatoshi Yoshida, Kengo Miyazono, Yoshiyuki Nishio, Yuichi Yamashita, Keisuke Suzuki

  • Schizophrenia
  • delusion
  • visual salience
  • incentive salience
  • active inference
  • free-energy principle

  Downloads ：969 - Submitted 2022-08-28 08:15:01 UTC - Posted 2022-09-01 02:22:55 UTC

  • PDF (日本語)

• Synthesis assistance of transmembrane domains is a fundamental function of the genetic code table assignment

  Genshiro Esumi

  • genetic code table
  • transmembrane domains
  • amino acid composition
  • nucleic acid composition
  • principal component analysis

  Downloads ：287 - Submitted 2022-08-12 00:47:57 UTC - Posted 2022-08-16 01:52:59 UTC

  • PDF (日本語)
  • Supplement_PDF (日本語)

• Collagens achieve highly biased amino acid composition not only by random mutation but also by slanted assignment of the genetic code table

  Genshiro Esumi

  • collagen
  • amino acid composition
  • GC content
  • synonymous codon
  • genetic code table

  Downloads ：221 - Submitted 2022-08-01 00:51:09 UTC - Posted 2022-08-03 07:19:26 UTC

  • PDF

• Origin of Essential Amino Acids: Extracellular Matrix Hypothesis

  Genshiro Esumi

  • essential amino acids
  • origin
  • extracellular matrix
  • synthetic cost
  • cytoplasm

  Downloads ：455 - Submitted 2022-07-21 08:03:12 UTC - Posted 2022-07-25 09:43:33 UTC

  • PDF (日本語)

• Development of a direct duplex real-time PCR assay for rapid testing of domestic cat hepadnavirus

  Maya Shofa, Akiho Ohkawa, Tamaki Okabayashi, Yasuyuki Kaneko, Akatsuki Saito

  • domestic cat hepadnavirus
  • direct duplex real-time PCR assay
  • rapid
  • sensitive

  Downloads ：313 - Submitted 2022-07-07 03:14:52 UTC - Posted 2022-07-07 08:55:49 UTC

  • PDF

• Development of green fluorescent protein-based cAMP indicators with expanded dynamic range and various working ranges

  Sohei Hiasa, Takeru Fujimori, Saki Aiki, Hiroshi Ueda, Takashi Tsuboi, Tetsuya Kitaguchi

  • biosensor
  • fluorescent protein
  • protein engineering
  • cyclic AMP
  • live-cell imaging
  • molecular evolution

  Downloads ：282 - Submitted 2022-06-30 07:04:18 UTC - Posted 2022-07-04 04:31:17 UTC

  • PDF
  • Supplement_PDF

• Synonymous codon usage and its bias in the bacterial proteomes primarily offset guanine and cytosine content variation to maintain optimal amino acid compositions

  Genshiro Esumi

  • synonymous codon
  • codon usage bias
  • amino acid composition
  • GC content

  Downloads ：322 - Submitted 2022-06-26 21:06:34 UTC - Posted 2022-07-04 04:13:56 UTC - Versions: 2

  • PDF_ver.2
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