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The Total Body Amino Acid Composition of an Animal Could Be Explained by a Mixture of the Average Composition of Its Proteome as an Intracellular Composition Estimate and the Type I Collagen Composition as an Extracellular Composition Estimate

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DOI:

https://doi.org/10.51094/jxiv.424

キーワード:

amino acid composition、 whole body、 intracellular protein、 extracellular matrix、 collagen

抄録

The total amino acid composition of an animal's body is theoretically explained by the sum of the product of the amount of each protein and its amino acid composition. However, because there are so many different types of proteins, and because the amount of each protein varies greatly, it has not been easy to actually describe the total amino acid composition of the body by the sum of the amount of proteins and their compositions.

In a previous paper, I showed that the amino acid composition of cells could be mutually convergent with the average composition of the proteome proteins in the organism's genome. On the other hand, type I collagen is known to be the most abundant protein among extracellular proteins. Assuming that the intracellular amino acid composition is consistent with the average proteome composition and the extracellular amino acid composition is consistent with that of type I collagen, I investigated whether the mixture of these two compositions could describe the total body composition of an animal. In this investigation, I used body compositions of fetal pigs at different stages of gestation from the literature. As a result, I found that mixtures of these estimates of the intracellular and extracellular composition sufficiently approximated the actual total body amino acid compositions in this investigation.

Therefore, I concluded that the three assumptions that the amino acid composition of intracellular proteins approximates the average proteome composition, that the amino acid composition of extracellular proteins approximates that of type I collagen, and that the total body amino acid composition of an animal can be explained by a mixture of such intracellular and extracellular estimates, may all be correct.

利益相反に関する開示

The author declare no conflicts of interest associated with this manuscript.

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引用文献

Esumi, G. (2023). The Distributions of Amino Acid Compositions of Proteins in an Organism’s Proteome Uniformly Approximate Binomial Distributions. Jxiv. https://doi.org/10.51094/jxiv.408

Alberts, B. (2022) Chapter 19: Cell Junctions and the Extracellular Matrix, Table 19-2 Some types of Collagens and Their Properties, Molecular Biology of the Cell. 7th Edition, Garland Science, Taylor and Francis Group, New York.

Wu, G., Ott, T. L., Knabe, D. A., & Bazer, F. W. (1999). Amino Acid Composition of the Fetal Pig. The Journal of Nutrition, 129(5), 1031–1038. https://doi.org/10.1093/jn/129.5.1031

Office for Resources, Policy Division Science and Technology Policy Bureau. Ministry of Education, Culture, Sports, Science and Technology. (2020). - Amino Acids -. J. STANDARD TABLES OF FOOD COMPOSITION IN JAPAN - 2020 - (Eighth Revised Edition). https://www.mext.go.jp/a_menu/syokuhinseibun/

Genome dataset, “Sus scorfa (pig) / Genome assembly Sscrofa11.1", NCBI website, https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000003025.6/

Esumi, G. (2022). Proteome and cellular amino acid compositions may be mutually constrained and in a state of narrow convergence. Jxiv. https://doi.org/10.51094/jxiv.95

Esumi, G. (2022). Origin of Essential Amino Acids: Extracellular Matrix Hypothesis. Jxiv. https://doi.org/10.51094/jxiv.121

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投稿日時: 2023-06-22 08:19:04 UTC

公開日時: 2023-06-27 06:05:45 UTC
研究分野
生物学・生命科学・基礎医学