Preprint / Version 1

Unraveling the Nutritional Significance of Essential Amino Acids through Synthesis Cost and Cellular Allocation

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DOI:

https://doi.org/10.51094/jxiv.1288

Keywords:

Essential amino acids, Amino acid synthesis cost, Economical Evolution, Differential Recycle Efficacy Framework, Allocation-Derived Significance Hypothesis

Abstract

In human clinical nutrition, it is broadly accepted that essential amino acids are critical for muscle and other body protein synthesis. However, the connection between humans’ loss (or cessation) of biosynthesis for these amino acids and their nutritional significance remains largely unexplained. Interestingly, observations in plants—which can produce all 20 proteinogenic amino acids—indicate that supplementation with amino acids deemed essential to humans inhibits plant growth, whereas most nonessential amino acids do not. More precisely, this growth-inhibitory effect corresponded solely to amino acids that are ‘high-cost’ in terms of biosynthesis.

These findings formed a key basis for the hypothesis developed here. By integrating them with prior research on “Economical Evolution” in bacteria and my subsequently proposed “Differential Recycling Efficacy Framework,” I present an additional inference: high-cost amino acids tend to be more abundant in cytoplasms where resource recovery is easier, and this cellular allocation drives their role as triggers for cytoplasmic protein synthesis. This hypothesis speculates that the reason plant growth is inhibited by high-cost amino acids is that, although plants need to break down nutrients stored during the day at night for their growth, externally supplied high-cost amino acids may suppress the plant's protein degradation process.

This new hypothesis, termed the Allocation-Derived Significance Hypothesis, posits that an amino acid’s biosynthetic cost determines its nutritional role via its cellular and subcellular allocation. Since this cellular-allocation-based concept of nutrition is novel, it may offer a fresh perspective in the life sciences and provide new insights for clinical nutrition.

Conflicts of Interest Disclosure

The author declare no conflicts of interest associated with this manuscript.

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References

Church, D. D., Hirsch, K. R., Park, S., Kim, I.-Y., Gwin, J. A., Pasiakos, S. M., Wolfe, R. R., & Ferrando, A. A. (2020). Essential Amino Acids and Protein Synthesis: Insights into Maximizing the Muscle and Whole-Body Response to Feeding. Nutrients, 12(12), 3717. https://doi.org/10.3390/nu12123717

Fouré, A., & Bendahan, D. (2017). Is Branched-Chain Amino Acids Supplementation an Efficient Nutritional Strategy to Alleviate Skeletal Muscle Damage? A Systematic Review. Nutrients, 9(10), 1047. https://doi.org/10.3390/nu9101047

Wolfe, R. R., Rutherfurd, S. M., Kim, I.-Y., & Moughan, P. J. (2016). Protein quality as determined by the Digestible Indispensable Amino Acid Score: evaluation of factors underlying the calculation: Table 1. Nutrition Reviews, 74(9), 584–599. https://doi.org/10.1093/nutrit/nuw022

González, A., & Hall, M. N. (2017). Nutrient sensing and TOR signaling in yeast and mammals. The EMBO Journal, 36(4), 397–408. https://doi.org/10.15252/embj.201696010

Akashi, H., & Gojobori, T. (2002). Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proceedings of the National Academy of Sciences, 99(6), 3695–3700. https://doi.org/10.1073/pnas.062526999

Kasalo, N., Domazet-Lošo, M., & Domazet-Lošo, T. (2024). Massive outsourcing of energetically costly amino acids at the origin of animals [Preprint]. BioRxiv. https://doi.org/10.1101/2024.04.18.590100

Esumi, G. (2025). A Complementary Perspective on the Evolutionary Emergence of Essential and Non-Essential Amino Acids [Preprint]. Jxiv. https://doi.org/10.51094/jxiv.1253

Nihei, N. (2009). 植物のアミノ酸吸収・代謝に関する研究 [Study of amino acid absorption and metabolism in plants] (Doctoral dissertation, University of Tokyo). University of Tokyo Repository. https://doi.org/10.15083/00002360

Lardos, M., Marmagne, A., Bonadé Bottino, N., Caris, Q., Béal, B., Chardon, F., & Masclaux-Daubresse, C. (2024). Discovery of the biostimulant effect of asparagine and glutamine on plant growth in Arabidopsis thaliana. Frontiers in Plant Science, 14. https://doi.org/10.3389/fpls.2023.1281495

Smith, D. R., & Chapman, M. R. (2010). Economical Evolution: Microbes Reduce the Synthetic Cost of Extracellular Proteins. MBio, 1(3), 28–32. https://doi.org/10.1128/mBio.00131-10

Cao, P., Kim, S.-J., Xing, A., Schenck, C. A., Liu, L., Jiang, N., Wang, J., Last, R. L., & Brandizzi, F. (2019). Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis. ELife, 8. https://doi.org/10.7554/eLife.50747

Semba, R. D., Trehan, I., Gonzalez-Freire, M., Kraemer, K., Moaddel, R., Ordiz, M. I., Ferrucci, L., & Manary, M. J. (2016). Perspective: The Potential Role of Essential Amino Acids and the Mechanistic Target of Rapamycin Complex 1 (mTORC1) Pathway in the Pathogenesis of Child Stunting. Advances in Nutrition, 7(5), 853–865. https://doi.org/10.3945/an.116.013276

Izumi, M., Hidema, J., Makino, A., & Ishida, H. (2013). Autophagy Contributes to Nighttime Energy Availability for Growth in Arabidopsis. Plant Physiology, 161(4), 1682–1693. https://doi.org/10.1104/pp.113.215632

McCoy, R. H., Meyer, C. E., & Rose, W. C. (1935). FEEDING EXPERIMENTS WITH MIXTURES OF HIGHLY PURIFIED AMINO ACIDS. Journal of Biological Chemistry, 112(1), 283–302. https://doi.org/10.1016/S0021-9258(18)74986-7

Kosakamoto, H., Sakuma, C., Okada, R., Miura, M., & Obata, F. (2024). Context-dependent impact of the dietary non-essential amino acid tyrosine on Drosophila physiology and longevity. Science Advances, 10(35). https://doi.org/10.1126/sciadv.adn7167

Takeuchi, F., Takada, M., Kobuna, Y., Uchida, H., & Adachi, Y. (2022). Effects of Non-Essential Amino Acids on Knee Joint Conditions in Adults: A Randomised, Double-Blind, Placebo-Controlled Trial. Nutrients, 14(17), 3628. https://doi.org/10.3390/nu14173628

Nishi, H., Uchida, K., Saito, M., Yamanaka, D., Nagata, H., Tomoshige, H., Miyata, I., Ito, K., Toyoshima, Y., Takahashi, S.-I., Hakuno, F., & Takenaka, A. (2022). Essential Amino Acid Intake Is Required for Sustaining Serum Insulin-like Growth Factor-I Levels but Is Not Necessarily Needed for Body Growth. Cells, 11(9), 1523. https://doi.org/10.3390/cells11091523

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Submitted: 2025-06-04 01:26:40 UTC

Published: 2025-06-06 07:38:12 UTC
Section
Biology, Life Sciences & Basic Medicine